PUBLICATIONS

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Coller, J. (2016). Decapping in 3D. Nature Struct. Mol. Biol. 23:954-956.

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Chen, YH, and Coller, J. (2016). A Universal Code for mRNA Stability? Trends Genet. 32:687-688.

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Radhakrishnan, A., Chen, Y.H., Martin, S., Alhusaini, A., Green, R., and Coller, J. (2016). The DEAD-box protein Dhh1p couples mRNA decay and translation by monitoring codon optimality. Cell, 167, 122-132.

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Tat, T., Maroney, P., Chamnongpol, S., Coller, J., and Nilsen, T. (2016). Cotranslational microRNA mediated messenger RNA destabilization. eLife, 10.7554/eLife/12880.

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Alhusaini, N., and Coller, J. (2016). The deadenylase components Not2p, Not3p, and Not5p promote mRNA decapping. RNA, 5:709-21

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Zhang, L., Prosdocimo, D.A., Bai, X., Fu, C., Zhang, R., Campbell, F., Liao, X., Coller, J. and Jain, M. (2015). KLF15 establishes the landscape of diurnal expression in the heart, Cell Reports, 13:2368-2375.

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Richter, J., and Coller, J. (2015). Pausing on Polyribosomes: Make Way for Elongation in Translational Control. Cell, 8: 292-300.

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Martin, S., and Coller, J. (2015). A Method that Will Captivate U Mol. Cell, 59: 716-717

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Presnyak, V., Alhusaini, N., Chen, Y.H., Martin, S., Morris, N., Kline, N., Olson, S., Weinberg, D., Baker, K.E., Graveley, B.R., and Coller, J. (2015). Codon optimality is a major determinant of mRNA stability. Cell, 160: 1111-1124

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Martin, S., and Coller, J. (2014). PAN-orama: three convergent views on a eukaryotic deadenylase. Nature Struc. Mol. Biol. 21:577-578

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Smith, J.E., Alvarez-Dominguez, J.R., Kline, N., Huynh, N., Geisler, S., Hu, W., Coller, J., and Baker, K.E. (2014). Translation of small open reading frames within unannotated RNA transcripts in Saccharomyces cerevisiae. Cell Reports 7: 1858-1866

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Geisler, S. and Coller, J. (2013). RNA in unexpected places: long noncoding RNAs function in a variety of cellular context. Nature Reviews: Molecular Cell Biol. 14: 699-712

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Sweet, T.J., Kovalak, C., and Coller, J., (2012) The DEAD-box Protein Dhh1 Promotes Decapping by Slowing Ribosome Movement. PLoS Biology., 10(6):1-15

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Hu, W., and Coller, J., (2012) What comes first: translational repression or mRNA degradation? The deepening mystery of microRNA function. Cell Research, doi:10.1038/cr.2012.80.

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Geisler, S., Lojek, L., Khalil, A., Baker, K.E., and Coller, J., (2012) A decapping pathway for long non-coding RNAs regulates inducible genes. Mol Cell, 45(3): 279-291.

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Highlighted by The Scientist

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Castellani, R. J., Gupta, Y., Sheng, B., Siedlak, S. L., Harris, P. L., Coller, J. M., Perry, G., Lee, H.-G., Tabaton, M., Smith, M. A., et al. (2011). A novel origin for granulovacuolar degeneration in aging and Alzheimer's disease: parallels to stress granules. Lab. Invest. 91, 1777–1786.

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Blewett, N., Coller, J., and Goldstrohm A. (2011). A quantitative assay for measuring mRNA decapping by splinted ligation reverse transcription polymerase chain reaction: qSL-RT-PCR. RNA, 17:535-543

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Geisler, S. and Coller, J. (2010). Alternate endings - A new story for mRNA decapping. Mol Cell, 40: 349-350

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Hu, W., Petzold, C., Coller, J., and Baker, K.E. (2010). Nonsense-mediated mRNA decapping occurs on polyribosomes in Saccharomyces cerevisiae. Nat. Struct. Mol. Biol., 17:244-247

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Hu, W., Sweet, T., Chamnongpol, S., Baker, K.E., and Coller, J. (2009) Co-translational mRNA decay in Saccharomyces cerevisiae. Nature, 461:225-229

RNA2007

Sweet, T.J, Boyer, B., Hu, W., Baker, K.E., and Coller, J. (2007) Microtubule disruption stimulates P-body formation. RNA, 13: 493-502. Supplemental data

Neuron2006

Barbee, S., Estes, P., Cziko, AM., Luedeman, R., Coller, J., Johnson, N., Howlett, I., MacDonald, P., Brand, A., Newbury, S., Levine, R., Wilhelm, J., Nakamura, A., Parker, R., and Ramaswami, R. (2006) Neuronal RNA granules and cytoplasmic processing bodies are similar in composition and function. Neuron, 52:997-1009

Cell2005a

Coller J., and Parker R. (2005) General Translational Repression by Activators of mRNA Decapping. Cell 122:875-886.

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Cheng Z., Coller J., Parker R., and Song H. (2005) Crystal structure of the DEAD box helicase, Dhh1p. RNA 11:1258-1270.

RNA2004

Baker K.E.*, Coller J.*, and Parker R. (2004) The yeast Apq12 protein affects nucleocytoplasmic mRNA transport. RNA 10:1352-1358

*Authors contributed equally

RNA2001

Coller J., Tucker M., Sheth U., Valencia M., and Parker R. (2001) The DEAD box helicase, Dhh1p, functions in mRNA decapping and interacts with both the decapping and deadenylase complexes. RNA 7:1717-1727.

EMBOJ2000

Gray N., Coller J., Dickson K., and Wickens M. (2000) Multiple portions of poly (A) binding protein stimulate translation in vivo through a poly (A)-independent mechanism. EMBO J 19:4723-4733.

GD1998

Coller J., Gray N., and Wickens M. (1998) mRNA stabilization by poly (A) binding protein is independent of a poly (A) tail and requires translation. Genes & Dev. 12:3226-3235.

REVIEWS AND CHAPTERS

Coller, J. (2015). Caps and Tales - 20th Anniversary of the RNA Journal. RNA 21: 588-589.

Hu, W. and Coller, J.(2013) Polyribosome analysis for determining mRNA and ribosome association in Saccharomyces cerevisiae. Methods Enzymol. 530:193-206.

Hu, W. and Coller, J.(2013) Method for measuring mRNA decay rates in Saccharomyces cerevisiae. Methods Enzymol. 530:137-55.

Khalil, A. and Coller, J (Editors) The Molecular Biology of long non-coding RNA. (2013) Springer

Presnyak, V., and Coller, J. (2013). The DHH1/RCKp54 family of helicases: An ancient family of proteins that promote translational silencing. Biochimica et Biophysica Acta. 1829:817-823.

Geisler, S. and Coller, J. (2012) XRN1: A major 5' to 3' exoribonuclease in eukaryotic cells. The Enzymes, 31:1-20.

Coller, J. and Rueda, D. (2009) RNA research in the Rustbelt. RNA Biol. 6:9-11

Coller J. (2008). Methods to determine mRNA half-life in Saccharomyces cerevisiae Methods Enzymol. 448:267-84.

Coller J. and Wickens, M. (2007). Tethered function assays: An adaptable approach to study RNA regulatory proteins Methods Enzymol. 429:299-321

Baker, K.E. and Coller J., (2006) Post-transcriptional control of gene expression: regulating mRNA translation. Genome Biology 7:332.

Coller J., and Parker R. (2004) Eukaryotic mRNA decapping. Annu. Rev. Biochem. 73:861-890.

Coller J., and Wickens M. (2002) Tethered function assays using 3’UTRs. Methods 26:142-150.

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