Jeffery M. Coller, PhD

Director
Center for RNA Science and Therapeutics
School of Medicine
Professor
Department of Genetics and Genome Sciences
School of Medicine
Professor
Department of Biochemistry
School of Medicine
Member
Molecular Oncology Program
Case Comprehensive Cancer Center

Research Information

Research Interests

Cancer immunotherapy is treatment that induces the immune system to attack tumor cells and is a promising therapy for a wide variety of malignancies. The Coller lab is working to develop a novel RNA-based reagent that will improve all T cell cancer immunotherapies by enhancing the proliferation capacity of tumor targeting immune cells. If successful, we will be able to partner with any corporate or academic entity developing T cell based cancer immunotherapies to improve the efficacy of their T cell therapy. In vitro transcribed (IVT) mRNA is emerging as a promising new drug class capable of delivering genetic information by transiently expressing proteins by structurally resembling natural mRNA. The advantage of mRNA (rather than integrating vectors carrying DNA) is that it poses no risk of genomic integration and will not transform the target cells to an immortalized or malignant state. Notably, our collaborators at Houston Methodist have recently shown that mRNA encoding the gene hTERT enhances the replicative capacity of human T cells, and increases the antitumor effects of CAR-T cells in an animal model of B-cell malignancy. These studies demonstrate that hTERT mRNA has great potential to improve the therapeutic benefits of CAR-T therapy. Our group is uniquely capable of developing mRNA-based therapeutics as we have developed new technology that can exquisitely control the expression of mRNA in vivo.  Using our recent discovery, we are working with our collaborators at Houston Methodist to optimize therapeutic mRNAs for the use in cancer immunotherapy.

Research Projects

Publications

View Publications

Google Scholar Publications

Radhakrishnan, A., Chen, Y.H., Martin, S., Alhusaini, A., Green, R., and Coller, J. (2016). The DEAD-box protein Dhh1p couples mRNA decay and translation by monitoring codon optimality. Cell, 167, 122-132.

Tat, T., Maroney, P., Chamnongpol, S., Coller, J., and Nilsen, T. (2016). Cotranslational microRNA mediated messenger RNA destabilization. eLife, 10.7554/eLife/12880.

Alhusaini, N., and Coller, J. (2016). The deadenylase components Not2p, Not3p, and Not5p promote mRNA decapping. RNA, 5:709-21

Zhang, L., Prosdocimo, D.A., Bai, X., Fu, C., Zhang, R., Campbell, F., Liao, X., Coller, J. and Jain, M. (2015). KLF15 establishes the landscape of diurnal expression in the heart, Cell Reports, 13:2368-2375.

Richter, J., and Coller, J. (2015). Pausing on Polyribosomes: Make Way for Elongation in Translational Control. Cell8: 292-300.

Martin, S., and Coller, J. (2015). A Method that Will Captivate U Mol. Cell, 59: 716-717

Presnyak, V., Alhusaini, N., Chen, Y.H., Martin, S., Morris, N., Kline, N., Olson, S., Weinberg, D., Baker, K.E., Graveley, B.R., and Coller, J. (2015). Codon optimality is a major determinant of mRNA stability. Cell, 160: 1111-1124

Smith, J.E., Alvarez-Dominguez, J.R., Kline, N., Huynh, N., Geisler, S., Hu, W., Coller, J., and Baker, K.E. (2014). Translation of small open reading frames within unannotated RNA transcripts in Saccharomyces cerevisiae. Cell Reports7:1858-1866.

Sweet, T.J., Kovalak, C., and Coller, J., (2012) The DEAD-box Protein Dhh1 Promotes Decapping by Slowing Ribosome Movement. PLoS Biology., 10(6):1-15.

Hu, W., and Coller, J., (2012) What comes first: translational repression or mRNA degradation? The deepening mystery of microRNA function. Cell Research, doi:10.1038/cr.2012.80.

Geisler, S., Lojek, L., Khalil, A., Baker, K.E., and Coller, J., (2012) A decapping pathway for long non-coding RNAs regulates inducible genes. Mol Cell, 45(3): 279-291. (Previewed by Wilkinson and colleagues)

Castellani, R. J., Gupta, Y., Sheng, B., Siedlak, S. L., Harris, P. L., Coller, J. M., Perry, G., Lee, H.-G., Tabaton, M., Smith, M. A., et al. (2011). A novel origin for granulovacuolar degeneration in aging and Alzheimer's disease: parallels to stress granules. Lab. Invest. 91, 1777–1786.

Blewett, N., Coller, J., and Goldstrohm A. (2011). A quantitative assay for measuring mRNA decapping by splinted ligation reverse transcription polymerase chain reaction: qSL-RT-PCR. RNA, 17:535-543

Geisler, S. and Coller, J. (2010). Alternate endings - A new story for mRNA decapping. Mol Cell, 40: 349-350

Hu, W., Petzold, C., Coller, J., and Baker, K.E. (2010). Nonsense-mediated mRNA decapping occurs on polyribosomes in Saccharomyces cerevisiae. Nat. Struct. Mol. Biol., 17: 244-247

Hu, W., Sweet, T., Chamnongpol, S., Baker, K., and Coller, J. (2009) Co-translational mRNA decay in Saccharomyces cerevisiae. Nature, 461: 225-229.

Sweet, T.J, Boyer, B., Hu, W., Baker, K.E., and Coller, J. (2007) Microtubule disruption stimulates P-body formation. RNA, 13: 493-502.

Barbee, S., Estes, P., Cziko, AM., Luedeman, R., Coller, J., Johnson, N., Howlett, I., MacDonald, P., Brand, A., Newbury, S., Levine, R., Wilhelm, J., Nakamura, A., Parker, R., and Ramaswami, R. (2006) Neuronal RNA granules and cytoplasmic processing bodies are similar in composition and function. Neuron21:997-1009

Coller J., and Parker R. (2005) General Translational Repression by Activators of mRNA Decapping. Cell 122:875-886.

Cheng Z., Coller J., Parker R., and Song H. (2005) Crystal structure of the DEAD box helicase, Dhh1p. RNA 11:1258-1270.

Baker K.E.*, Coller J.*, and Parker R. (2004) The yeast Apq12 protein affects nucleocytoplasmic mRNA transport. RNA 10:1352-1358.

*Authors contributed equally

Coller J., Tucker M., Sheth U., Valencia M., and Parker R. (2001) The DEAD box helicase, Dhh1p, functions in mRNA decapping and interacts with both the decapping and deadenylase complexes. RNA 12:1717-1727.

Coller J. (2000) Control of mRNA metabolism via the poly (A) binding protein and development of the tethered function assay. Doctorate Thesis, University of Wisconsin.

Gray N., Coller J., Dickson K., and Wickens M. (2000) Multiple portions of poly (A) binding protein stimulate translation in vivo through a poly (A)-independent mechanism. EMBO J 19:4723-4733.

Coller J., Gray N., and Wickens M. (1998) mRNA stabilization by poly (A) binding protein is independent of a poly (A) tail and requires translation. Genes & Dev. 12:3226-3235.

 

REVIEWS AND CHAPTERS

Geisler, S. and Coller, J. (2013) RNA in unexpected places: long noncoding RNAs function in a variety of cellular contexts. Nature Reviews Molecular Cell Biology, doi:10.1038/nrm3679

Hu, W. and Coller, J.(2013) Polyribosome analysis for determining mRNA and ribosome association in Saccharomyces cerevisiae. Methods Enzymol. 530:193-206.

Hu, W. and Coller, J.(2013) Method for measuring mRNA decay rates in Saccharomyces cerevisiae. Methods Enzymol. 530:137-55.

Khalil, A. and Coller, J. editors. (2013) The Molecular Biology of Non-coding RNA. Springer Science

Presnyak, V., and Coller, J. (2013). The DHH1/RCKp54 family of helicases: An ancient family of proteins that promote translational silencing. Biochimica et Biophysica Acta. 1829:817-823.

Geisler, S. and Coller, J. (2012) XRN1: A major 5' to 3' exoribonuclease in eukaryotic cells. The Enzymes, 31:1-20.

Coller, J. and Rueda, D. (2009) RNA research in the Rustbelt. RNA Biol. 6:9-11

Coller J. (2008). Methods to determine mRNA half-life in Saccharomyces cerevisiae Methods Enzymol. 448:267-84.

Coller J. and Wickens, M. (2007). Tethered function assays: An adaptable approach to study RNA regulatory proteins Methods Enzymol. 429:299-321

Baker, K.E. and Coller J., (2006) Post-transcriptional control of gene expression: regulating mRNA translation. Genome Biology 7:332.

Coller J., and Parker R. (2004) Eukaryotic mRNA decapping. Annu. Rev. Biochem. 73:861-890.

Coller J., and Wickens M. (2002) Tethered function assays using 3’UTRs. Methods 26:142-150.

Education

PhD
Biochemistry
University of Wisconsin-Madison
1999
Post Doc
Howard Hughes Medical Insitute
2005