Presnyak, V., Alhusaini, N., Chen, Y.H., Martin, S., Morris, N., Kline, N., Olson, S., Weinberg, D., Baker, K.E., Graveley, B.R., and Coller, J. (2015). Codon optimality is a major determinant of mRNA stability. Cell, 160: 1111-1124

Smith, J.E., Alvarez-Dominguez, J.R., Kline, N., Huynh, N., Geisler, S., Hu, W., Coller, J., and Baker, K.E. (2014). Translation of small open reading frames within unannotated RNA transcripts in Saccharomyces cerevisiae. Cell Reports 7: 1858-1866

Geisler, S., Lojek, L., Khalil, A., Baker, K.E., and Coller, J., (2012) A decapping pathway for long non-coding RNAs regulates inducible genes. Mol Cell, 45(3): 279-291..

Baker, K.E. and Nislen, T.W. (2011). The Centrality of RNA, Then and Now. Cell, 147: 962-963

Hu, W., Petzold, C., Coller, J., and Baker, K.E. (2010). Nonsense-mediated mRNA decapping occurs on polyribosomes in Saccharomyces cerevisiae. Nat. Struct. Mol. Biol., 17: 244-247

Hu, W., Sweet, T., Chamnongpol, S., Baker, K., and Coller, J. (2009) Co-translational mRNA decay in Saccharomyces cerevisiae. Nature, 461: 225-229.

Meaux, S., van Hoof, A. and Baker, K.E. (2008) Nonsense-mediated mRNA decay in yeast does not require PAB1 or a poly(A) tail. Mol. Cell 29:134-140

Zaharik ML, Lamb SS, Baker KE, Krogan NJ, Neuhard J, Kelln RA. (2007) Mutations in yhiT enable utilization of exogenous pyrimidine intermediates in Salmonella enterica serovar Typhimurium. Microbiology 153:2472-82

Sweet, T.J., Boyer, B., Hu, W., Baker, K.E. and Coller, J. (2007) Microtubule disruption stimulates P-body formation. RNA, 13:1-10

Baker, K.E. and Coller, J. (2006) The many routes to regulating mRNA translation. Genome Biology 7:332.

Baker, K.E. and Parker, R. (2006) Conventional 3’ end formation is not required for NMD substrate recognition in Saccharomyces cerevisiae. RNA 12:1441.

Baker, K.E. and Parker, R. (2006) Features of nonsense-mediated mRNA decay in Saccharomyces cerevisiae. In “Nonsense-mediated mRNA decay”, ed. Lynne E. Maquat, Landes Biosciences, Austin, Texas, Chapter 1, pp 3-13.

Baker, K.E. and Condon, C. (2004) Under the Tucson sun: A meeting in the desert on mRNA decay. RNA 10:1680.

Baker, K.E., Coller, J. and Parker, R. (2004) The yeast Apq12 protein affects nucleocytoplasmic mRNA transport. RNA 10:1352.

Baker, K.E. and Parker, R. (2004) Nonsense-mediated mRNA decay: terminating erroneous gene expression. Curr Opin Cell Biol 16:293.

Baker, K.E. and Mackie, G.A. (2003) Ectopic RNase E sites promote bypass of 5’-end-dependent mRNA decay in Escherichia coli. Mol Microbiol 47:75.

Baker, K.E., DiTullio, K.P., Neuhard, J. and Kelln, R.A. (1996) Utilization of orotate as a pyrimidine source by Salmonella typhimurium and Echerichia coli requires the dicarboxylate transport protein encoded by dctA. J Bacteriol 178:7099.

Vial, T.C., Baker, K.E. and Kelln, R.A. (1993) Dual control by purines and pyrimidines of the expression of the pyrD gene of Salmonella typhimurium. FEMS Microbiol Lett 111:309.

Sorensen, K.I., Baker, K.E., Kelln, R.A. and Neuhard, J. (1993) Nucleotide pool-sensitive selection of the transcriptional start site in vivo at the Salmonella typhimurium pyrC and pyrD promoters. J Bacteriol 175:4137.

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